Version 0.6.3

Two fixes:

1. Pin h5py<=3.12.1 to avoid a regression that causes an OSError when loading some GZIP compressed deformation fields.
2. Fix another pesky packaging issue

Version 0.6.2

Fixes another packaging issue (thanks @Robbie1977).

Version 0.6.1

This version fixes an issue with the packaging that led to Elastix transforms not being bundled correctly (by @Robbie1977).

Version 0.6.0

This version incorporates the BANC (Brain and Nerve Cord) connectome:

• template brain (flybrains.BANC)
• brain and neuropil meshes (e.g. flybrains.BANC.mesh_brain)
• transforms to/from JRC2018F/JRCVNC2018F (by @jasper-tms, see #17)
• transforms between BANC and the male CNS dataset
• mirror transform for BANC

Additionally:

• fix for male CNS VNC mesh (normals were inverted which led to in-volume queries being out of whack)

Version 0.5.2

This version includes two changes:

1. Renamed template space JRCFIB2022Mtilt -> JRCFIB2022Mplot
2. Improved the JRCFIB2022Mplot to also correct a small rotation around the z-axis

Red = old transform; Green = updated transform.

Version 0.5.1

Immediate minor fix to adjust another FANC transform weight that I somehow missed in the last commit 🤦

Version 0.5.0

This version includes:

1. A new template space called JRCFIB2022Mtilt where the VNC is tilted forward for visualisation. Comes with mesh + transform.

2. Adjusted weights for FANC transforms to make sure the recommended path is taken when going from FANC to JRCVNC2018U (resolved #15)

Version 0.4.0

This update brings two improvements:

1. Greatly improved the FLYWIRE/FAFB14 <-> JRCFIB2022M (maleCNS) transform.
2. Added support for two-step CMTK transforms (relevant for the new MANC <-> JRCFIB2022M transform, see jefferislab/BridgingRegistrations#10).

Version 0.3.0

Changes:

• potentially breaking as it may change transform paths:
  • weights for AliasTransforms are now set to 0 (i.e. no cost)
  • weights for simple AffineTransforms are set to 0.1
• added a new JRC2018F-FLYWIRE CMTK transform (by S. Cachero, Jefferis lab) to jefferislab/BridgingRegistrations:

  import flybrains
  # Re-run download to get the new transform
  flybrains.download_jefferislab_transforms()

• improved the mirror transforms for FAFB14 and FLYWIRE based on the new JRC2018F-FLYWIRE transform
• added a symmetrizing transform for FLYWIRE
• added a VNC mesh to JRCFIB2022M: it now has .mesh (brain + VNC), .mesh_brain and .mesh_vnc
• fixed stray vertex in FLYWIRE.mesh_whole_brain
• some under-the-hood refactoring

Version 0.2.11

Fixes

• fixed bounding box for JRCFIB2022Mraw