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    47 repositories

    • RFDpoly

      Public
      A diffusion-based ML model for de novo design of DNA, RNA, proteins, and mixed assemblies.
      Python
      •
      Other
      •1•6•0•1•Updated Dec 8, 2025Dec 8, 2025

    • foundry

      Public
      Central repository for biomolecular foundation models with shared trainers and pipeline components
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •61•482•22•3•Updated Dec 8, 2025Dec 8, 2025

    • pyrosetta-extras

      Public
      PyRosetta Extras: a repository for extra PyRosetta scripts, tools, unit testing, and documentation
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • rc

      Public
      Utility to run RosettaCommons tools
      Rust
      •1•1•0•1•Updated Dec 7, 2025Dec 7, 2025

    • rosetta

      Public
      The Rosetta Bio-macromolecule modeling package.
      protein-structureprotein-designenzyme-designmacromolecular-modelingantibody-design
      C++
      •
      Other
      •136•353•34•21•Updated Dec 6, 2025Dec 6, 2025

    • atomworks

      Public
      A generalized computational framework for biomolecular modeling.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •32•360•16•0•Updated Dec 1, 2025Dec 1, 2025

    • RFdiffusion

      Public
      Code for running RFdiffusion
      Python
      •
      Other
      •549•2.6k•214•16•Updated Nov 20, 2025Nov 20, 2025

    • RFdiffusion2

      Public
      Inference code for RFdiffusion2
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •50•356•6•3•Updated Nov 11, 2025Nov 11, 2025

    • pyrosetta_scripts

      Public
      A place in which scripts developed in PyRosetta can be stored and shared. In the not too distant future, these scripts will be tested along side the main repository to ensure that they continue to work even if we make changes to the interfaces of core classes.
      Scala
      •
      Other
      •8•8•1•2•Updated Nov 7, 2025Nov 7, 2025

    • documentation

      Public
      Documentation for Rosetta Applications. The source for the Rosetta documentation wiki.
      PostScript
      •
      Other
      •5•7•3•15•Updated Nov 6, 2025Nov 6, 2025

    • RFantibody

      Public
      Python
      •
      MIT License
      •119•392•63•7•Updated Oct 31, 2025Oct 31, 2025

    • rdkit

      Public
      The official sources for the RDKit library
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •955•4•0•2•Updated Sep 24, 2025Sep 24, 2025

    • binder

      Public
      Binder, tool for automatic generation of Python bindings
      pythonbindings
      C++
      •
      MIT License
      •71•356•38•7•Updated Sep 17, 2025Sep 17, 2025

    • RFjoint2

      Public
      Code for running RFjoint2
      Python
      •
      Other
      •1•2•0•0•Updated Aug 27, 2025Aug 27, 2025

    • demos

      Public
      Demos of many Rosetta applications
      Roff
      •
      Other
      •4•19•1•2•Updated Jun 10, 2025Jun 10, 2025

    • tools

      Public
      Tools for parsing Rosetta source code and scripts for running specific Rosetta applications.
      Python
      •
      Other
      •3•8•7•8•Updated Jun 6, 2025Jun 6, 2025

    • chimerax-rosetta-server

      Public
      A ChimeraX server plugin to recieve data from Rosetta.
      Python
      •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • pybind11

      Public
      Seamless operability between C++11 and Python
      C++
      •
      Other
      •2.2k•9•0•4•Updated Dec 16, 2024Dec 16, 2024

    • privileged_residues

      Public
      Python
      •
      Other
      •4•2•0•19•Updated Dec 8, 2024Dec 8, 2024

    • protein_generator

      Public
      Joint sequence and structure generation with RoseTTAFold sequence space diffusion
      Python
      •
      MIT License
      •60•324•16•0•Updated Oct 28, 2024Oct 28, 2024

    • PyRosetta.notebooks

      Public
      Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
      jupyter-notebookdnarosettarna-structure-predictionprotein-designprotein-foldingprotein-structure-predictiongoogle-colabpyrosettaprotein-docking
      Jupyter Notebook
      •
      MIT License
      •165•638•27•6•Updated Aug 12, 2024Aug 12, 2024

    • rosetta_clone_tools

      Public
      A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.
      Shell
      •26•24•0•1•Updated Mar 8, 2024Mar 8, 2024

    • rosetta_scripts_scripts

      Public
      This is the repository where all developers writing protocols in XML should place all of their scripts
      Roff
      •
      Other
      •0•6•1•1•Updated Mar 7, 2024Mar 7, 2024

    • scientific_benchmark_data

      Public
      various input data for scientific benchmark tests
      Roff
      •
      Other
      •0•1•0•0•Updated Mar 7, 2024Mar 7, 2024

    • additional_protocol_data

      Public
      A repository for holding canonical inputs for Rosetta used by some (but not all) protocols; this is for data too big to go in main/database and that is not tightly coupled to the code in main/.
      Roff
      •
      Other
      •1•1•0•0•Updated Mar 7, 2024Mar 7, 2024

    • pyrosetta_colab_setup

      Public
      Files for our auxiliary pyrosetta_colab_setup PyPI package
      Python
      •
      MIT License
      •3•3•0•1•Updated Mar 7, 2024Mar 7, 2024

    • RoseTTAFold

      Public
      This package contains deep learning models and related scripts for RoseTTAFold
      Python
      •
      MIT License
      •454•2.2k•90•6•Updated Feb 15, 2024Feb 15, 2024

    • bcl_rosetta

      Public
      A version of the Biochemical Library (BCL; https://github.com/BCLCommons/bcl) for integration with Rosetta.
      C++
      •
      MIT License
      •19•4•0•0•Updated Feb 11, 2024Feb 11, 2024

    • AF2_peptide_hallucination

      Public
      Code for designing binders to flexible peptides with AlphaFold2 Hallucination
      Python
      •
      Other
      •2•28•0•0•Updated Dec 21, 2023Dec 21, 2023

    • tensorflow_graphs

      Public
      trRosetta model binaries for using the trRosetta protocol within Rosetta proper
      PureBasic
      •
      MIT License
      •3•2•0•1•Updated Jun 22, 2023Jun 22, 2023